PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102914.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 269aa    MW: 31152.4 Da    PI: 8.8331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-1192143154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +r+ h  +Er+RR+++ + ++ Lr llP      +++K s  + +  A +YIk+ 
  XP_027102914.1  92 KRTFHRDMERQRRQEMANLYASLRNLLPLeY---TKGKRSITDHVHVAENYIKQV 143
                     799**************************77...*******************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MDDFTNYLFP LQQDDPLLFQ YSPIPSVSFY HKDTTIHRQD LVNQGASSLV SPQLNTEENR  60
NSTARKRQQK PSPAVQADNH DCGKNPDDRK QKRTFHRDME RQRRQEMANL YASLRNLLPL  120
EYTKGKRSIT DHVHVAENYI KQVEMNIRKL EVKRDKLRNL TGGSSHVHLK NVEGKNSFSI  180
NFTVRPCSAG GIEILMKKYV ADTNLFPLSR ILDVLLDEGL TVVSCVCTRV NEEYIYTIQT  240
EASHMRDVDP LSLQEKLTEK VMTWKKFEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192104KRTFHRDMERQRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.16e-39bHLH family protein