PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027102808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 489aa MW: 54209.9 Da PI: 6.5388 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 83 | 99 | 3 | 19 |
ETTTTEEESSHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrH 19 C++Cgk F ++ ++ H XP_027102808.1 83 CENCGKEFASWKSFLEH 99 **************999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence |
MDCTEDQPPK FKHYCRICKK GFMCGRALGG HMRAHGIGDE GGSLDDDDVA SDWEDKFGGA 60 DRTCRRMYQL RTNPNRLKSC RICENCGKEF ASWKSFLEHG KCSSDDAESL VSSPGSDGEY 120 EGERKGCQWS KRKRSLRTKV GSFSSAYPSS EDEDLLLARC LVDLANARFE VEPEESCASA 180 SKEEERRINP VTAYFNTPLI ASRVPLDKPK GASKGLFECK ACKKVFNSHQ ALGGHRASHK 240 KVKGCFAAKQ DQQDDSSLAD DDVTIHDEFF PSKSPSSLQF EQGPTMAGAS RRKSKVHECT 300 ICHRVFSTGQ ALGGHKRCHW ITSNSQETSS LVKLQFNHDH MDHQILHQGP PLINKSETLD 360 LNIPATQGDH ELSGILRPQN PLSFEVSTDI RLHTWTPNLG AETKCDSQNC HHQNDDDQGN 420 ENDRHNDSNN INKNNINCSN GPIENADDEA DSKVELAKLS DLKDINLSGN SSQWLQVGIG 480 STARVNTNP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-26 | C2H2 family protein |