PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102791.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 116aa    MW: 13743.7 Da    PI: 7.9669
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102791.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.51e-1826113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+YA ++ F+v+k++ +k  ++g +t++++   keg +++ + + +  +rtra t+tgC  k+++ + +   k++v++l leHnHel
  XP_027102791.1  26 KFYNNYAFKTDFNVCKDYLNKD-KDGVTTSKRYSYCKEGVKRKYEGD-VMPKRTRALTKTGCGTKMVIVLLReIMKYRVHDLILEHNHEL 113
                     6******************998.778899999988888888888877.899***************99887779***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MDCNKLVEDR TPELEMEFNS EEDAHKFYNN YAFKTDFNVC KDYLNKDKDG VTTSKRYSYC  60
KEGVKRKYEG DVMPKRTRAL TKTGCGTKMV IVLLREIMKY RVHDLILEHN HELHIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.17e-11FAR1 family protein