PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102546.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 259aa    MW: 29555.1 Da    PI: 9.752
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g++KK  ELS+LC+++++ ii+s+
  XP_027102546.1 10 FITNDSARKATFKKRKKGLMKKVGELSTLCGIDACAIIYSP 50
                    89**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVGELSTLCG IDACAIIYSP YESQPEVWPN  60
TMGVQRVISQ FKRMPEMEQS KKMVNQESFI RQRIAKANEQ LKKQHKDNRE KEMTEVMYQC  120
LTGKGMQNMS MPDLNDLGWL IDQNLKEIYK RIDSLKKMAP HHQQISQPQA ATAPPPPAQP  180
PAHPPVTLAA NDMLAGGVQV QEQKPSVDLT MDAAVHRPQW FTDWMNNPAG ENMGFGHGDE  240
MMMQFHDNHN PMWSSAFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-66M-type_MADS family protein