PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102532.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 234aa    MW: 26109.8 Da    PI: 8.4743
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102532.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.4e-29153210159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk+s++p sYYrC++++C+vkk+v+r ++d+++v++tYeg Hnh+
  XP_027102532.1 153 LDDGYRWRKYGQKSVKNSKYP-SYYRCSHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 210
                     59*******************.9***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MNLRSSPLLF MEGQDQETPP LPLPVPSPPT NPSFLFAQPH LPSPNSSLIF PNISHSQPLV  60
LQDNLHDLVG LFSAPPPTPS GIPNIAHDNT NDQIMMPSLE TAPLTISDNA VAPSPEEVAI  120
KDKIRRAASS SSKNRKNAVP KVVFQTRSPD DILDDGYRWR KYGQKSVKNS KYPSYYRCSH  180
HTCNVKKQVQ RLSKDTSIVV TTYEGIHNHP CEKLMETLSP LLEQIQFLTR PVLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.15e-52WRKY family protein