PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102496.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 241aa MW: 25330.8 Da PI: 7.5559

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.3e-39	25	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPv G+v++i++lqqq+ +l+ael XP_027102496.1 25 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVFGCVAHIFALQQQVVNLQAEL 119 7*********************9989***************************************************************** PP DUF260 95 allkee 100 ++l+ + XP_027102496.1 120 SYLQGH 125 *99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MSANTSSSPS GGAAGSSSGN TGGGPCGACK FLRRKCVAGC IFAPYFDSEQ GAAHFAAVHK 60 VFGASNVSKL LLHIPVHKRL DAVVTICYEA QARLRDPVFG CVAHIFALQQ QVVNLQAELS 120 YLQGHLATLE LPPPPPPSAQ PQPIIAPPSL TIADLPTGSS SAPATYDLSS LFDPVVQLPW 180 TMQQPRQMDS HQFGAARAPA EASSSAGTGD LQELARELLH RHRTSSTVPC NEVPPLPPHS 240 K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	9e-79	LBD family protein