PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102490.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 276aa    MW: 31251.9 Da    PI: 5.713
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ +Ed +l+ ++k++G  +W+  ++  g+ R++k+c++rw +yl
   XP_027102490.1 14 KGPWSSDEDRKLIAYIKKYGIWNWNQMPEFAGLSRSGKSCRLRWVNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding55.81.1e-1768110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eEd+ +++ ++ lG++ W++Ia+ ++ gRt++q+k++w++
   XP_027102490.1  68 GNFTEEEDQTIINMHANLGSR-WSAIAKQLP-GRTDNQIKNHWHT 110
                      79*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MVRSGKQEKL AVKKGPWSSD EDRKLIAYIK KYGIWNWNQM PEFAGLSRSG KSCRLRWVNY  60
LRPDVKLGNF TEEEDQTIIN MHANLGSRWS AIAKQLPGRT DNQIKNHWHT RLKKRLLVKT  120
SVANPGAKSQ GTDDGKSIQE NSPAGNAKEP ATDTSEVSKL EGLLHVENSI NIPPILSPSC  180
GHWDFRGSTQ ENTSSTEIIE DSDQIFWTQP FLMGNLSMDS QPSAYIQSQF DPLIWSQEPL  240
SPSSSFLDSG YCDSILFNYS EKDDDVSFLE RPEFQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-52MYB family protein