PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102488.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 331aa MW: 37254.8 Da PI: 5.4785

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.4e-14	119	170	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ah ++Er+RR+++N+ ++ Lr l+P+ + +K + a+i+ A++Y+k+L+ XP_027102488.1 119 QRMAHIAVERNRRKQMNEYLSLLRGLMPEG---YVQKGDQASIVGGAINYVKELE 170 79*************************9...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MALETVVYQQ DMLGYNIKDL CNYFGGGNIW GCDFDFAETF ESSSFDFRQE NTDEKSPLSL 60 TVPPSENWAP NAASELESCV HKIPDDQNLQ LDSSSTMSSS RPRRRRSRPK KNQEEIENQR 120 MAHIAVERNR RKQMNEYLSL LRGLMPEGYV QKGDQASIVG GAINYVKELE QQLQFLDGQS 180 HTNRSYDSGP SSLISSSSSP FSEFFTYPQY SATMTSSENA FTITNLMSDP SSTRGNRLAA 240 ADIEVTMVEN HANLKVRSRK RPKLLMKMVS GLQSLRLTIL HLNVTTADQI VLYSISLKVE 300 DDCRLTTVDE IAAAVNKMLR RIQEEAAVFT G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	108	RPRRRRSR
2	120	131	RMAHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-72	bHLH family protein