PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102346.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 281aa MW: 31764.3 Da PI: 9.975

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.3	2.8e-30	49	153	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ ++ s+++ ++ +++ss++ XP_027102346.1 49 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKSEIDKLPPLQIQAGSFSQFHQAIALSQHSSATssnlphffc 143 79*************************************************************88888777444444444433333333445555 PP TCP 89 .........k 89 XP_027102346.1 144 anpsymkdvG 153 5554444440 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MIMNSKDKAF QTKQEGDVND SKFSKSASTS RPWAGFRNPR IVRVSRSFGG KDRHSKVCTV 60 RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVVDWLIDA TKSEIDKLPP LQIQAGSFSQ 120 FHQAIALSQH SSATSSNLPH FFCANPSYMK DVGAPSFLSN KQGLKINDHI HGNSQTILDR 180 SRCWNPDVAV NRKEAEKEAA AGKDKWIASN EQEGMEGYAA QLTAQNFFPE ATPIFQCNPK 240 TLKVIMPYLW DLQWLSRLVL SCVSVLLQQQ FLRFFLHCLH I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	3e-46	TCP family protein