PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102177.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 285aa MW: 32304.6 Da PI: 5.7033

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v ++G g+W++++++ g++R++k+c++rw +yl XP_027102177.1 14 RGPWTPEEDAKILAYVSRHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	47.4	4.4e-15	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T+eE+e ++++++ G++ W+ Ia+ ++ gRt++++k++w++ XP_027102177.1 68 DNFTPEEEECILELHRTIGSR-WSWIAKQLP-GRTDNDVKNYWNT 110 68*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MGRPPCCDKA NVKRGPWTPE EDAKILAYVS RHGIGNWTLV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPEEEECILE LHRTIGSRWS WIAKQLPGRT DNDVKNYWNT KLKKKLFNMG 120 IDPVTHKPFS QIFTEFGKLG NLPSTINQNA LLNTEPRIKP EPLLLPQKFP NANNLQIIEH 180 MVGPFLFRGI EQNEEDYKIR GISSPDDISS AVVQEETPLH AATSIIENEV NDKAGVSCYG 240 LKPEPEAMRY MESSSSAADS FLESILASDR DALEFPELLD GFCDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	4e-77	MYB family protein