PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027102172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 19803.1 Da PI: 5.4623 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.1 | 4e-17 | 19 | 64 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k+ienks q tfskRr+ ++ KA ELS C+++vavi+ s+ g++ XP_027102172.1 19 KKIENKSYLQATFSKRRTSLFRKAAELSATCGVDVAVIVQSPGGNV 64 68****************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MEATVKRKGG SGRKKIEIKK IENKSYLQAT FSKRRTSLFR KAAELSATCG VDVAVIVQSP 60 GGNVFAAGGR SSVTTIVDRY LAATSSTPNN ADQFPQADGG GQERDQDEEQ YAQILKEIEA 120 EKIKEKSLME SQGGEGFWWE RGFDDLDVNE LEEHIAAMET LRKNVSAKAE EKAKANNIAA 180 S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-18 | M-type_MADS family protein |