PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102113.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 325aa    MW: 35425.5 Da    PI: 5.3809
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87e-17126226198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                     f+k+l +sdv+ ++r+vlpk+ aee+   ++++e++ +t+ d +g  +W++k+++  +++s++y+++ ++  Fvk +gL+ gD +v++  ++  +
  XP_027102113.1 126 FEKELQRSDVGPLRRIVLPKRAAEEYlpVLESKEGMFITMDDMDGnHVWRLKFRFwpNNNSRMYLFE-NTGVFVKTHGLRHGDYIVLY--QDlVG 217
                     89**************************55666899******998799*****99777777777776.********************..67688 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     +++v+++++
  XP_027102113.1 218 RNYVIQARK 226
                     888888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MDMETTEAYG MVSSATELLS FVTKQAVENT NNPGHFDHGV VVPGGAAGGS GGLGSSSGGN  60
VGGGPGSTGE GSLKMNSGQK KKRISRVKRS SMSTLRLPFD TTTSSSNASQ FVPARVIDPT  120
RLRFLFEKEL QRSDVGPLRR IVLPKRAAEE YLPVLESKEG MFITMDDMDG NHVWRLKFRF  180
WPNNNSRMYL FENTGVFVKT HGLRHGDYIV LYQDLVGRNY VIQARKASDS VVHDTSGHGA  240
QGILSDYAAS DVVQGPESEI NASGYIPEMF PPVNEMGDMS FIYDTSFSND SPLDYLGGPM  300
TDFSRVGGHE SNFGSIDNLS LDDFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-61B3 family protein