PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101900.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 459aa MW: 52259.6 Da PI: 5.8655

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.2	1.8e-17	10	58	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyey 49 +i n++ r++ f kR+ng++KK +ELS+LC+++++ ii+++ +++ ++ XP_027101900.1 10 FIRNETERKTCFKKRKNGLIKKVQELSTLCGIDACAIIYGPhDQEPETW 58 89**************************************724555666 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MTRKKIKLAF IRNETERKTC FKKRKNGLIK KVQELSTLCG IDACAIIYGP HDQEPETWPP 60 SPPAVLDLLE RYKSLPERFR RLENQQSYTR SRVDKVHEQI RRKHNGIREN EVTNIMYRCL 120 RGEEVQNLRW ADLNELEWMV SRNLREVSRR ISVLKETVPQ PSAPKAPLET GGYGGNDEGM 180 VAPELPVNEM RKFTWPSLNA SMVAPVMPFG DMQNLTRLLT NARMVAPEMP SSEIQNLTWP 240 ATTTTSAVGN QMENFKWFSN NGSMVVPEMP LGLMQNPTWF TNDAPMVAPE MQNPTRFTNN 300 ASIAAPEMQN STWSTCNSSM LAPEFSMSEM QRPTWSTNIS SMVAPEMLVS DMQNWAWSTN 360 NASMLTPDML TNEMQNITWS ANKASMVAPE RPMSKMPNPA WSANKAHMVA PEMDRDELQI 420 YAVDMDMLNV QPWLSDFVWN DSFFEPINNN GAGPSNRAP

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MTRKKIKLAF IRNETERKTC FKKRKNGLIK KVQELSTLCG IDACAIIYGP HDQEPETWPP  60
SPPAVLDLLE RYKSLPERFR RLENQQSYTR SRVDKVHEQI RRKHNGIREN EVTNIMYRCL  120
RGEEVQNLRW ADLNELEWMV SRNLREVSRR ISVLKETVPQ PSAPKAPLET GGYGGNDEGM  180
VAPELPVNEM RKFTWPSLNA SMVAPVMPFG DMQNLTRLLT NARMVAPEMP SSEIQNLTWP  240
ATTTTSAVGN QMENFKWFSN NGSMVVPEMP LGLMQNPTWF TNDAPMVAPE MQNPTRFTNN  300
ASIAAPEMQN STWSTCNSSM LAPEFSMSEM QRPTWSTNIS SMVAPEMLVS DMQNWAWSTN  360
NASMLTPDML TNEMQNITWS ANKASMVAPE RPMSKMPNPA WSANKAHMVA PEMDRDELQI  420
YAVDMDMLNV QPWLSDFVWN DSFFEPINNN GAGPSNRAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKIKLAFIRNETERKTCFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-38	M-type_MADS family protein