PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101700.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 365aa MW: 42238.2 Da PI: 9.0303

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.1	3.6e-21	91	184	1	86
trihelix 1 rWtkqevlaLiearr...emeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+++v++Li+a + e++ +++r ++ k+++W+++s++m +rg++++p qC++k+ +l+k+y+++++ +++ +++++++ ++ ++++ XP_027101700.1 91 KWTDDMVKLLITALSytgEDDVAVQRfrfvSCPKAGKWRAISNVMVQRGYHVTPHQCEDKFYDLSKKYRRLNDLLGRGtACKVVENPKLMNSMD 184 7************55522333333333578********************************************5599999999999996 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MQKQWLLKPV NGQQESYPSY DGFVFPPKFF LDMLPFGVQG PDKPLLLTEH NEGKKIDNFV 60 GTGEHLNVVQ SSDNEIEGGG GVKETSHKRI KWTDDMVKLL ITALSYTGED DVAVQRFRFV 120 SCPKAGKWRA ISNVMVQRGY HVTPHQCEDK FYDLSKKYRR LNDLLGRGTA CKVVENPKLM 180 NSMDLSKEVV AEVMKILSSK QLFFKEMCSY YNGNRFFLPH DQSLQHLVKV ALKAKGKLSQ 240 YVSHELPAKR RRELEDFGVS GFRSASDCNR KSAYHLSNEQ TDPISLTNEG GEGDRSQDDW 300 MTSRLLHLEE QKLQIQEQRL DLEKFLRDTQ QQDLKLEKMR LENQVMRLEN QRLAVKLKYW 360 KRGPD

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MQKQWLLKPV NGQQESYPSY DGFVFPPKFF LDMLPFGVQG PDKPLLLTEH NEGKKIDNFV  60
GTGEHLNVVQ SSDNEIEGGG GVKETSHKRI KWTDDMVKLL ITALSYTGED DVAVQRFRFV  120
SCPKAGKWRA ISNVMVQRGY HVTPHQCEDK FYDLSKKYRR LNDLLGRGTA CKVVENPKLM  180
NSMDLSKEVV AEVMKILSSK QLFFKEMCSY YNGNRFFLPH DQSLQHLVKV ALKAKGKLSQ  240
YVSHELPAKR RRELEDFGVS GFRSASDCNR KSAYHLSNEQ TDPISLTNEG GEGDRSQDDW  300
MTSRLLHLEE QKLQIQEQRL DLEKFLRDTQ QQDLKLEKMR LENQVMRLEN QRLAVKLKYW  360
KRGPD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	5e-63	Trihelix family protein