PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101576.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 235aa    MW: 27108.5 Da    PI: 6.5809
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1349.5e-112685167
            FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67
                    kfYn+YA ++GFsvrk++ +k  ++g +t+r++ C keg +++ +++      +++ +  +C  ++ 
  XP_027101576.1 26 KFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEEH------NHELHIAQCAHMMP 85
                    6*****************9998.8999************99997776......66666667766664 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MDCSKLAENG TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEE HNHELHIAQC AHMMPSQRKV SVAQGFQAEI SEDAGLSLKQ SHELMGKEAG  120
GMGNVGYTRD DLKRYLRTRR ERSLKYGEAE AMCGKHPSTI LTDQDHAMAA ALSIVMPETF  180
HGLCTFHIRR NFMKHLGNHY KENSDLPYMF GACMYEFEEV EQFNRVWEDG EETQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-13FAR1 family protein