PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101521.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 488aa MW: 53295.9 Da PI: 7.1544

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101521.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.3e-12	316	361	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L XP_027101521.1 316 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVAYINEL 361 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MEDILAAAAS SPASLLCEAT LAAPKQRLQF IMQNQREWWV YSIFWQASRD RDGRLQTLAD 60 NGVKVTTQDI FGRRKAGKEV PSSFPWRDST SHSKSDGFGD GRDVLCVRRR PSGPNLQFGS 120 YAWLVGDHQL LFYNCERAKE AHSHGVKTFV CISTSGGILE LGSSELIKED WGLVQLCKTL 180 FGSEDQNSTS STSTTTTTGD AILGSNNTTP AGGGLFDIGG LLGHDAKQSS LQEDKPQESN 240 LTIMNIDDES ASGTLTPIGG QPISTGSAGM AHTGPKLLET QNFMPEAAGK WSKVRSPSSR 300 RRMREASMTG QEMALNHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL LADAVAYINE 360 LKAKIQELEA RVGVGSRGGA QYHDRKLLVT TATSCGDFIQ ETQSTVTADQ NQSGMSSKPY 420 NSVPYTANNS SHEIHVKFVN GSVAILHILC PDVNYPSAKL MDALRQMELQ VCSASFSPVQ 480 DLMLHTML

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MEDILAAAAS SPASLLCEAT LAAPKQRLQF IMQNQREWWV YSIFWQASRD RDGRLQTLAD  60
NGVKVTTQDI FGRRKAGKEV PSSFPWRDST SHSKSDGFGD GRDVLCVRRR PSGPNLQFGS  120
YAWLVGDHQL LFYNCERAKE AHSHGVKTFV CISTSGGILE LGSSELIKED WGLVQLCKTL  180
FGSEDQNSTS STSTTTTTGD AILGSNNTTP AGGGLFDIGG LLGHDAKQSS LQEDKPQESN  240
LTIMNIDDES ASGTLTPIGG QPISTGSAGM AHTGPKLLET QNFMPEAAGK WSKVRSPSSR  300
RRMREASMTG QEMALNHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL LADAVAYINE  360
LKAKIQELEA RVGVGSRGGA QYHDRKLLVT TATSCGDFIQ ETQSTVTADQ NQSGMSSKPY  420
NSVPYTANNS SHEIHVKFVN GSVAILHILC PDVNYPSAKL MDALRQMELQ VCSASFSPVQ  480
DLMLHTML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46760.1	2e-33	bHLH family protein