PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027101518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27832.4 Da PI: 10.118 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.9e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_027101518.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 113.6 | 2e-37 | 94 | 189 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ s +ea+a+++qqe++kL+++i+nLq+++R++lGe+L+sL+l++L++Le+++e++++++RskKnell+++ie +qk+e +l+++n++Lr+k++ XP_027101518.1 94 NTGSISEANAQHYQQEASKLRAQISNLQNSNRNMLGESLGSLNLRDLKNLESKVERGISRVRSKKNELLFAEIEFMQKREVDLHNNNQYLRSKIA 188 444599***************************************************************************************98 PP K-box 100 e 100 e XP_027101518.1 189 E 189 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MSCQSDPSRE TSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKE TIKRYKKVNS DSANTGSISE ANAQHYQQEA SKLRAQISNL 120 QNSNRNMLGE SLGSLNLRDL KNLESKVERG ISRVRSKKNE LLFAEIEFMQ KREVDLHNNN 180 QYLRSKIAET ERAQHDMNLV PGSSDYELVS AQPFDARTFL QVNGLQLNNH YPRQEQRPLQ 240 LV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-117 | MIKC_MADS family protein |