PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101457.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 221aa    MW: 24173.9 Da    PI: 10.2189
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.35.5e-201562249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    r + +sn  vtfskRr g++KKA+EL +LC+ae+a+i+fs+  k++ y
  XP_027101457.1 15 RMSKESNLLVTFSKRRSGLFKKAYELHTLCGAEIAIIVFSPGKKVFSY 62
                    567889999*********************************999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MARKSKGRQK IEMTRMSKES NLLVTFSKRR SGLFKKAYEL HTLCGAEIAI IVFSPGKKVF  60
SYGHPCLYSI IDRFVTGKAG PSSSSSQIVE AHRAASIREL NMQLTEMLNQ LDAERKRGEE  120
LIKLRTASQG RCWWEAPVND LGLQELEQLK AAMEELKKNV ANQAEKLMVE ASNATAFLGS  180
SSSKGGGHVG PSNIDAKVPP PGLGLSMTPH GFALGYGRGF F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-57M-type_MADS family protein