PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101441.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WOX

Protein Properties

Length: 396aa MW: 43673.8 Da PI: 7.9915

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101441.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	55	115	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_027101441.1 55 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 115 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.7	3.9e-36	54	117	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq XP_027101441.1 54 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 117 689***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MASSNRHWPS MFKSKPCNSQ HQWQHEINSS LISNGCQRAP SCASSGSEER SPEPKPRWNP 60 RPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKQRHF 120 QSTTKSQPPQ IPHITSTPPA TKTTSLSSSS SSSEKSSQNS ADKTLSLGPK NLFDTSSSPT 180 ASVNQHFFQS HSAEFLPAPF FFPVQQPPSA AESTPPAAFS QGFCFSDAPS LSHLADNTIQ 240 NSSSILLSDL LLMNHLPTKK VQDEKIKLQQ QLNYTALTTP PITTSQSIFS PTRVAAVSSI 300 DHVHGVGETG SADPTKSTVF INDVAFEVTS AFFNVREAFG DDAVLVHSSG QPVMTNEWGV 360 TLQPLQHDLS DSWMLKRGDQ PFVTCLVFVA SLYLAL

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MASSNRHWPS MFKSKPCNSQ HQWQHEINSS LISNGCQRAP SCASSGSEER SPEPKPRWNP  60
RPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKQRHF  120
QSTTKSQPPQ IPHITSTPPA TKTTSLSSSS SSSEKSSQNS ADKTLSLGPK NLFDTSSSPT  180
ASVNQHFFQS HSAEFLPAPF FFPVQQPPSA AESTPPAAFS QGFCFSDAPS LSHLADNTIQ  240
NSSSILLSDL LLMNHLPTKK VQDEKIKLQQ QLNYTALTTP PITTSQSIFS PTRVAAVSSI  300
DHVHGVGETG SADPTKSTVF INDVAFEVTS AFFNVREAFG DDAVLVHSSG QPVMTNEWGV  360
TLQPLQHDLS DSWMLKRGDQ PFVTCLVFVA SLYLAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-61	WOX family protein