PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101421.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 321aa    MW: 34920.6 Da    PI: 8.5843
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.51e-191562249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    r + +sn  vtfskRr g++KKA+EL +LC+ae+a+i+fs+  k++ y
  XP_027101421.1 15 RMSKESNLLVTFSKRRSGLFKKAYELHTLCGAEIAIIVFSPGKKVFSY 62
                    567889999*********************************999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MARKSKGRQK IEMTRMSKES NLLVTFSKRR SGLFKKAYEL HTLCGAEIAI IVFSPGKKVF  60
SYGHPCLYSI IDRFVTGKAG PSSSSSQIVE AHRAASIREL NMQLTEMLNQ LDAERKRGEE  120
LIKLRTASQG RCWWEAPVND LGLQELEQLK AAMEELKKNV ANQAEKLMVE ASNATAFLGS  180
SSSKGGGHVG PSNIDAKVPP PGLGLSMTPH GNPQPNSSAL HLVGAHRNAS SVRELNLQLT  240
QILSELEVEK KRGEAFDLMR KASQNSSSSS TNLGLNNSGD INPGVTAVGC DDMFFNQTTT  300
EYCNNCIVPY GSDDFGNSLQ V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-56M-type_MADS family protein