PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027101420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27062.7 Da PI: 9.5531 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.4 | 2.2e-19 | 23 | 70 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+i+n snr+v fskRr ++KKA+EL+vL++aeva+i+ s +++ XP_027101420.1 23 KKIDNLSNRKVAFSKRRVSLFKKASELCVLTGAEVAIIVHSLGKRVFA 70 68*************************************997766665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MAKMNNMMMK KKTTQGRKKI EIKKIDNLSN RKVAFSKRRV SLFKKASELC VLTGAEVAII 60 VHSLGKRVFA FGHPNIDAVI NRYTTGSASS SSSSSSSSSS VADPNTLLGA HEIQQHNRHY 120 AKVSKKLEVE RKRKELIEGS KLENGGSFWW DDPIEHMGLE ELQQYKASLE ELKKKLLMRA 180 DDLMLLINSS SSSTNLGFNN SGDINPGVTA VGCDDMFFNQ TTTEYCNNSI VPYGSDDFGN 240 SLQV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-29 | M-type_MADS family protein |