PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027101419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 26701.2 Da PI: 8.7906 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.5 | 9.4e-20 | 20 | 68 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n snrqv fskRr g++KKA+EL+vL +aeva+++ s +++ + XP_027101419.1 20 KKIDNLSNRQVAFSKRRVGLFKKASELCVLIGAEVAIVVHSLGKRVFAF 68 68*************************************9987777665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MNNMMMKKKT TQGRKKIDIK KIDNLSNRQV AFSKRRVGLF KKASELCVLI GAEVAIVVHS 60 LGKRVFAFVH PSIDAVINRY TTGSASSSSS SSSSSSSVAD PNTPLGAHEI QQHNRHYAKV 120 SKELEVERKR KELIEGSKLE NGGSFWWDDP IEHMGLEELQ QYKASLEELK KKLLMRADDL 180 MLLKNSSSSS TNLGFNNSGD INPGVTAVGC DDMFFNQTTT EYCNNSIVPY GSDDFGNSLQ 240 V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-28 | M-type_MADS family protein |