PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100776.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 367aa MW: 40316.7 Da PI: 5.1293

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.6	1.2e-21	122	218	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt++ v++Li+++ +++e+ ++ kk++W++vsk+++++g+ +sp+qC++k+++lnkrykk++++ +++ +++++++ +++++ XP_027100776.1 122 KWTDSIVRLLIQVVANVGEDGPSEGaegarrksgiIKKGKWRKVSKVLMSKGLCVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENPALLNN 216 7************988888754335556677779*****************************************669********9 PP trihelix 85 le 86 +e XP_027100776.1 217 ME 218 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MNRNQQNPGG LLGMSRSHQQ NLSSSNPARL QNDQVPSLMN MKSVAEKDSR IGLREVKDSA 60 PRGFAMTFAR ERVAEPRNVM SNGAVNINEI SSDEDDPSMA EGNGRDTGGG KGKKDAPWVR 120 MKWTDSIVRL LIQVVANVGE DGPSEGAEGA RRKSGIIKKG KWRKVSKVLM SKGLCVSPQQ 180 CEDKFNDLNK RYKKLNDILG RGTSCRVVEN PALLNNMEHL SDKAKEDVRK LLGSKHLFYK 240 EMCAYHNGQK ITDCNDFELP VHAASVAEQI WEHCDGSPVV GEGTKDKDGS PVAGEGTTDK 300 DGSPVAAQSS KDNDISEGDD ADENDESDHY MSEDEAADNN ASGSVDRVET SENREMWEGL 360 WKYQVSI

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MNRNQQNPGG LLGMSRSHQQ NLSSSNPARL QNDQVPSLMN MKSVAEKDSR IGLREVKDSA  60
PRGFAMTFAR ERVAEPRNVM SNGAVNINEI SSDEDDPSMA EGNGRDTGGG KGKKDAPWVR  120
MKWTDSIVRL LIQVVANVGE DGPSEGAEGA RRKSGIIKKG KWRKVSKVLM SKGLCVSPQQ  180
CEDKFNDLNK RYKKLNDILG RGTSCRVVEN PALLNNMEHL SDKAKEDVRK LLGSKHLFYK  240
EMCAYHNGQK ITDCNDFELP VHAASVAEQI WEHCDGSPVV GEGTKDKDGS PVAGEGTTDK  300
DGSPVAAQSS KDNDISEGDD ADENDESDHY MSEDEAADNN ASGSVDRVET SENREMWEGL  360
WKYQVSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-59	Trihelix family protein