PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027100762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 28354.2 Da PI: 7.0641 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.2 | 8.3e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C +dC+l+p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q +q+ XP_027100762.1 4 SCNGCRVLRKGCGEDCTLRPCLqwiktPESQANATVFLAKFYGRAGLVNLINAGPDHLRPEIFRSLLYEACGRIINPIYGSVGLLWSGNWQRCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_027100762.1 99 AVEAVLEGS 107 **9988765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MRMSCNGCRV LRKGCGEDCT LRPCLQWIKT PESQANATVF LAKFYGRAGL VNLINAGPDH 60 LRPEIFRSLL YEACGRIINP IYGSVGLLWS GNWQRCQAAV EAVLEGSPIM QVSTDDAAAG 120 GHPITPLKDC DIRHLSKKSN GIHRVRTRNR FKRSGFKSQV DSVPEFMNET TKFSITGWND 180 DEENDGSEEE LIKRAPSHDS FSVETVEPTL VNRAEQGRVV KSETIMVGED DDLVLDLTLG 240 VNPVVRTHLS AGGRRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-79 | LBD family protein |