PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027100463.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family WOX
Protein Properties Length: 336aa    MW: 38258.9 Da    PI: 7.2832
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027100463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.8e-2184143357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql +Lee++++  r+psaee++ +A+kl    +++ ++V++WFqN++a+e++
  XP_027100463.1  84 SRWNPTPEQLMALEEMYRRgVRTPSAEEIKLIAAKLrqfgKIEGKNVFYWFQNHKARERQ 143
                     7*****************99**************************************97 PP
2Wus_type_Homeobox111.74.1e-3683145365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Lee+y++G+rtP++eei+ i+a+L+++Gkie+kNVfyWFQN+kaRerqk+
     XP_027100463.1  83 SSRWNPTPEQLMALEEMYRRGVRTPSAEEIKLIAAKLRQFGKIEGKNVFYWFQNHKARERQKR 145
                        79***********************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MWLKNCEDSV KESRYDALYN QRIRHIFPKS NASMSNCAPC CLIPSNYSSH IGNGIGFPMN  60
YHQTCVNHDE ESKDENHMEP IVSSRWNPTP EQLMALEEMY RRGVRTPSAE EIKLIAAKLR  120
QFGKIEGKNV FYWFQNHKAR ERQKRRRQPD SNSSKNATDV ETLDAKETGF SCKALEGEHN  180
KKLVTTIPAY SSTSKESVSM QRSMVTESGT DGWTHLDERE LQKRSERKIA KGATSLMDMS  240
CMAPNSDLLN TITAPSTLES SGENQQITAL NSSVVSPSCG EDMINYEDGR RNHHTLQLFP  300
LRSDDHCSIK ASETEFKELR TTISSKLPPK QFYEFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.14e-33WOX family protein