PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027100462.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family WOX
Protein Properties Length: 360aa    MW: 40931.1 Da    PI: 7.0587
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027100462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.4e-21108167357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql +Lee++++  r+psaee++ +A+kl    +++ ++V++WFqN++a+e++
  XP_027100462.1 108 SRWNPTPEQLMALEEMYRRgVRTPSAEEIKLIAAKLrqfgKIEGKNVFYWFQNHKARERQ 167
                     7*****************99**************************************97 PP
2Wus_type_Homeobox111.54.5e-36107169365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Lee+y++G+rtP++eei+ i+a+L+++Gkie+kNVfyWFQN+kaRerqk+
     XP_027100462.1 107 SSRWNPTPEQLMALEEMYRRGVRTPSAEEIKLIAAKLRQFGKIEGKNVFYWFQNHKARERQKR 169
                        79***********************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MWLKNCEDSV KESRYDALYN QRIRHIFPKS NASMSNCAPC CLIPSNYSSH IGNGIGFPMN  60
YHQSMSQFFV SFSSVLLICV MSYECLVACV NHDEESKDEN HMEPIVSSRW NPTPEQLMAL  120
EEMYRRGVRT PSAEEIKLIA AKLRQFGKIE GKNVFYWFQN HKARERQKRR RQPDSNSSKN  180
ATDVETLDAK ETGFSCKALE GEHNKKLVTT IPAYSSTSKE SVSMQRSMVT ESGTDGWTHL  240
DERELQKRSE RKIAKGATSL MDMSCMAPNS DLLNTITAPS TLESSGENQQ ITALNSSVVS  300
PSCGEDMINY EDGRRNHHTL QLFPLRSDDH CSIKASETEF KELRTTISSK LPPKQFYEFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-33WOX family protein