PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100450.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 769aa MW: 89248.5 Da PI: 8.4857

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.9	2.3e-20	99	189	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027100450.1 99 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVTRFIMEHNHPLA 189 6**************98887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MQRRGTEVEK SKVSTFVHNF ETHDMVQETE NGRMGMDGCG RLRAFDLNQE PECDRHTFIE 60 ESGGSIGGHE DEEANDLVGA IGVDDVMKLT FDTEEEAGEF YNLYAKLSGF GIRKSNAKRD 120 ADGISRFRKW VCCCEGYRNE KWFNYEDRKR EAKPITRTGC GACFRVKYDI ESVKYVVTRF 180 IMEHNHPLAS EASVQHIRSH RKVSDAEYAQ AKSLKLVGAR ICQIMKHFVI KAGGYSNVGF 240 CIKDLYNRMD EERRKDIFNG DAEGALGFLA AKKDADEMFF YKYHVDNEGR LARLFWADSK 300 SRADFSVFGD VLVFDTTYKT NKYRKPLVVL AGVNNHLNST IFGCALLSDE RIETYEWVLS 360 TFVEAMKGRK PVAVMTDGDS AMRRAIKNLL PDACHRLCSW HLHRNARSNI CCEEFNNRLY 420 NLMERKCSTL EFEDRWARLV NECGVVENEW VKKLYRRRRL WAEAYLRGHF FAGMRSTQRC 480 EKMNAFLNEY LNEKMRLYEF VRSFDLAIAW LRHTESKAIH TSENTKPVLT TILPELEWSA 540 AEVFTRNVFF MVRKHLNRQG LLISEGWSED GGSRTYYYSK YGGHGISWKV DYDRSMENLI 600 CSCMKFESKG IPCAHMFRVM VVEGMNRIPE ACISKRWTKG VYCTNNGMNA FVADEQLTQM 660 ARYGTLKSSC NTMCYYASYM DDAFNDLQQM FDKHSVDLKE KWIDRGYGGD GFAMDSRVRN 720 DRSRRTFGLL DPRVSRCKGD HKHAEAKKKR KCGHCRYYRN CIRSYTVVN

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MQRRGTEVEK SKVSTFVHNF ETHDMVQETE NGRMGMDGCG RLRAFDLNQE PECDRHTFIE  60
ESGGSIGGHE DEEANDLVGA IGVDDVMKLT FDTEEEAGEF YNLYAKLSGF GIRKSNAKRD  120
ADGISRFRKW VCCCEGYRNE KWFNYEDRKR EAKPITRTGC GACFRVKYDI ESVKYVVTRF  180
IMEHNHPLAS EASVQHIRSH RKVSDAEYAQ AKSLKLVGAR ICQIMKHFVI KAGGYSNVGF  240
CIKDLYNRMD EERRKDIFNG DAEGALGFLA AKKDADEMFF YKYHVDNEGR LARLFWADSK  300
SRADFSVFGD VLVFDTTYKT NKYRKPLVVL AGVNNHLNST IFGCALLSDE RIETYEWVLS  360
TFVEAMKGRK PVAVMTDGDS AMRRAIKNLL PDACHRLCSW HLHRNARSNI CCEEFNNRLY  420
NLMERKCSTL EFEDRWARLV NECGVVENEW VKKLYRRRRL WAEAYLRGHF FAGMRSTQRC  480
EKMNAFLNEY LNEKMRLYEF VRSFDLAIAW LRHTESKAIH TSENTKPVLT TILPELEWSA  540
AEVFTRNVFF MVRKHLNRQG LLISEGWSED GGSRTYYYSK YGGHGISWKV DYDRSMENLI  600
CSCMKFESKG IPCAHMFRVM VVEGMNRIPE ACISKRWTKG VYCTNNGMNA FVADEQLTQM  660
ARYGTLKSSC NTMCYYASYM DDAFNDLQQM FDKHSVDLKE KWIDRGYGGD GFAMDSRVRN  720
DRSRRTFGLL DPRVSRCKGD HKHAEAKKKR KCGHCRYYRN CIRSYTVVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	455	460	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-97	FAR1 family protein