PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027100236.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 262aa    MW: 29022.1 Da    PI: 9.2258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027100236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1577.8e-49141421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+k+ + +l++ ++i+evd++k++PwdLp      e+e yfFskr+ ky++g+r+nrat sgyWkatg dk++++ 
  XP_027100236.1  14 LPPGFRFHPTDEELVVQYLKRKALSCPLPA-SIIPEVDVCKSDPWDLPGD---LERERYFFSKREVKYRNGNRSNRATGSGYWKATGVDKQIVAC 104
                     79****************************.89***************44...46899***********************************97 PP

             NAM  96 kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                     +++l      g+kktLvfy+g+ p+g +tdWvmheyrl
  XP_027100236.1 105 RSRLgvggvGGVKKTLVFYRGKPPNGIRTDWVMHEYRL 142
                     44445555599*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKALSCP LPASIIPEVD VCKSDPWDLP  60
GDLERERYFF SKREVKYRNG NRSNRATGSG YWKATGVDKQ IVACRSRLGV GGVGGVKKTL  120
VFYRGKPPNG IRTDWVMHEY RLVNVVEAAA PISPLQNKSA QENWVLCRIF LKRRSGKSSE  180
DEVTESSLLN CTAAAPPPLG GKMNGVVVFY DFLGKDTREL NPGATISSSS GRSGITEISC  240
NEAEDMEESS SCTSLGPFKR NQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-83NAC family protein