PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100212.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 592aa MW: 66780.5 Da PI: 5.632

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	77.3	2e-24	202	255	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_027100212.1 202 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMGVPWLTRENVASHLQKYRL 255 68*****************.9*****************************8 PP
2	Myb_DNA-binding	41.3	3.5e-13	204	254	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT ++++++v+av+q G + +k+I mg +t++++ s++qky+ XP_027100212.1 204 RVVWTVDLHQKFVKAVNQIGFDkvGPKKILDLMGvPWLTRENVASHLQKYR 254 678***********************************************7 PP
3	Response_reg	81.3	3.1e-27	23	131	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ +++al+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G XP_027100212.1 23 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 115 89*******************.***********999999******************6644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ XP_027100212.1 116 ACDYLLKPIRMKELRN 131 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MMITENTGFS SPRSDAFPAG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLARDALNLL 60 RERKDGFDIV ISDVNMPDMD GFKLLEHVGL EMDLPVIMMS VDGETSRVMK GVQHGACDYL 120 LKPIRMKELR NIWQHVFRKR IHEVRDIEFH EGIDEIHLMK NGSDLSEDRH LPSGIDSFSG 180 KKRKEAEKHD DRECNDPSSV KKARVVWTVD LHQKFVKAVN QIGFDKVGPK KILDLMGVPW 240 LTRENVASHL QKYRLYLGRL QKEKELTTSF GGMKDSDISA KEPNGNHCLH DLVNKQQCDL 300 ASGSYNIQGN KNMIQNVDLK MHEADLKCTV PKPMEEPKKA IDGESSYPQK SSSKKMSLNH 360 SFGQFDSDLE FAAVIPKQYP WNEETSQAQF SRERKPHFQP KRGFNTLPPT CLPENIQLDC 420 VQPSSSPNSR PSSIDRDKLA EAEMKPAYVK NRSQGIEQLS PAGCDADLFS AQPGSKLTNN 480 QAFKPTQSAV WSMNNHSLDE ILEGGMESAG RSLNFASGTD YTSWDENVHS GSLQGDFQPV 540 STGPQGIEFL NYSEPELTTE VPTFLYDSLK FDSEYPFDSM EYPVIDQGLF IV

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MMITENTGFS SPRSDAFPAG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLARDALNLL  60
RERKDGFDIV ISDVNMPDMD GFKLLEHVGL EMDLPVIMMS VDGETSRVMK GVQHGACDYL  120
LKPIRMKELR NIWQHVFRKR IHEVRDIEFH EGIDEIHLMK NGSDLSEDRH LPSGIDSFSG  180
KKRKEAEKHD DRECNDPSSV KKARVVWTVD LHQKFVKAVN QIGFDKVGPK KILDLMGVPW  240
LTRENVASHL QKYRLYLGRL QKEKELTTSF GGMKDSDISA KEPNGNHCLH DLVNKQQCDL  300
ASGSYNIQGN KNMIQNVDLK MHEADLKCTV PKPMEEPKKA IDGESSYPQK SSSKKMSLNH  360
SFGQFDSDLE FAAVIPKQYP WNEETSQAQF SRERKPHFQP KRGFNTLPPT CLPENIQLDC  420
VQPSSSPNSR PSSIDRDKLA EAEMKPAYVK NRSQGIEQLS PAGCDADLFS AQPGSKLTNN  480
QAFKPTQSAV WSMNNHSLDE ILEGGMESAG RSLNFASGTD YTSWDENVHS GSLQGDFQPV  540
STGPQGIEFL NYSEPELTTE VPTFLYDSLK FDSEYPFDSM EYPVIDQGLF IV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-124	ARR-B family protein