PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100204.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 370aa MW: 40826.4 Da PI: 5.2444

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.7	2.7e-27	55	149	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rrg+ +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e+ s + + ++l+ XP_027100204.1 55 RWTRQEILVLIQGKRVAENRVRRGRtaglafgsaHVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREETDSFWLMRNDLR 149 8********************8666777777689******************************************999988998888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MALEQLSLAV AAAPPHSDSP SPSPSTAALN GRQPPTTALD PHKDDDSAKV PRLPRWTRQE 60 ILVLIQGKRV AENRVRRGRT AGLAFGSAHV EPKWASVSSY CKRHGVNRGP VQCRKRWSNL 120 AGDFKKIKEW ESQIREETDS FWLMRNDLRR ERKLPGFFDR EVYDILDGGG RADGATPAAE 180 EGAEELVLAL APSATEGPEE ADAETEAVFD SGRSAAADDG LFSDFDQSVQ EEVVGSPDKE 240 FRPANETPVT AVPAPTPISE KQYQPISQGH PAQGTSFEKQ PSLNPEIGST QEGKKRKRYI 300 AEVDEQDEMK SLHDQLIEAF ERNGKLLSSQ LESQNVHLQL DREQRKDQAN SLISVLHKLA 360 DALGRIADKL

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MALEQLSLAV AAAPPHSDSP SPSPSTAALN GRQPPTTALD PHKDDDSAKV PRLPRWTRQE  60
ILVLIQGKRV AENRVRRGRT AGLAFGSAHV EPKWASVSSY CKRHGVNRGP VQCRKRWSNL  120
AGDFKKIKEW ESQIREETDS FWLMRNDLRR ERKLPGFFDR EVYDILDGGG RADGATPAAE  180
EGAEELVLAL APSATEGPEE ADAETEAVFD SGRSAAADDG LFSDFDQSVQ EEVVGSPDKE  240
FRPANETPVT AVPAPTPISE KQYQPISQGH PAQGTSFEKQ PSLNPEIGST QEGKKRKRYI  300
AEVDEQDEMK SLHDQLIEAF ERNGKLLSSQ LESQNVHLQL DREQRKDQAN SLISVLHKLA  360
DALGRIADKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-109	Trihelix family protein