PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027100184.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 163aa    MW: 18031.4 Da    PI: 9.7598
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027100184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind71.53.5e-2211581175
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 
                     mdddg + rn+gyyep+ slk nl+lqlmss+a+rd+k+    r++ + + + ++++++rd         m++  rd+++++        ++k++
  XP_027100184.1   1 MDDDGLNMRNWGYYEPS-SLKGNLALQLMSSVADRDTKPflsgRDSGV-MGAANGVYHPRDylisgapdhMDY-VRDSWINH--------RDKFV 84 
                     9*****99********9.***********************9888888.999*********************.9******9........78999 PP

       GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseksk 175
                     ++ +          ++ +vl++t+ ++++q+l++     +     e +k      +e + + ke    kkr+  + pk++k+kk+kk+++++k
  XP_027100184.1  85 HMFPG--------NPYNTVLPETSGTHQMQMLQQ-----P-----EPSKDARVS-VEDVGVRKEPGPAKKRAAVSAPKAPKSKKPKKNPAVPK 158
                     99993........3578899*******9999322.....2.....222222333.44588889999999999999999999999999887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MDDDGLNMRN WGYYEPSSLK GNLALQLMSS VADRDTKPFL SGRDSGVMGA ANGVYHPRDY  60
LISGAPDHMD YVRDSWINHR DKFVHMFPGN PYNTVLPETS GTHQMQMLQQ PEPSKDARVS  120
VEDVGVRKEP GPAKKRAAVS APKAPKSKKP KKNPAVPKEP TSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.13e-28BBR-BPC family protein