PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027099510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 215aa    MW: 24219 Da    PI: 6.6464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027099510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-161460248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +W+++Ed+ l d++k++G g+W+ I++  g+ R++k+c++rw +yl
   XP_027099510.1 14 RSWSPQEDQELMDYIKKHGEGHWRNIPKATGLLRCGKSCRLRWVNYL 60
                     68*****************************99************97 PP

2Myb_DNA-binding50.26e-1666111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_027099510.1  66 RGDFAEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                      788999****************.*********.************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MRKPCCDKEG MNKRSWSPQE DQELMDYIKK HGEGHWRNIP KATGLLRCGK SCRLRWVNYL  60
RPDLKRGDFA EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LSKKLASMGI  120
DPKHHRLSHH LARNLINSIA AGETSSALEH HQPFPLDHDQ IKSSSASDHY QASDAGDGIN  180
DDDDSSSLLP DLNVDMASDS SLPSGTTTED KMSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-68MYB family protein