PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027099323.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 179aa    MW: 19859.1 Da    PI: 9.7013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027099323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-0517591054
                    HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + RR + ++ +++L +llP+ a   +++Kl+  + +e+   Y+k+L
  XP_027099323.1 17 KLRRLHFKNLYSRLASLLPPlA---SQEKLTLPALVEQSFVYVKDL 59
                    679999**************55...*****************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MQPEGVSCKI GRSVKGKLRR LHFKNLYSRL ASLLPPLASQ EKLTLPALVE QSFVYVKDLK  60
KRIDELNAKK EELKEDLVLP AIEMSEKGPI LEVNLVTSLK KGFTLHEVIS ILEEEGAQVL  120
SANYSTSKNR IYYTISSQAY SSRIGIETSR VYQRLKTLSA AGFASPALGG TLCPLQFEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-25bHLH family protein