PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027099163.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 336aa    MW: 36872.4 Da    PI: 4.9386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027099163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.67.3e-1761422128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                     p Gf+F+Pt+ee+++  L  k ++++ ++++v++e  +y++   P +L                k +++  y F+k +k +a  +r  r++   +
  XP_027099163.1   6 PIGFHFRPTEEEIITL-LWLKDTNQQKHITDVVPEKILYDAdaSPCKLFGdedvrwelcddsGKKRTKRMAYVFTKLSKMSA--NRIARTAGCET 97 
                     89************54.55555555556668999988887633799996346788888776422223346699*99999876..59999999999 PP

             NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     W+ + k +++ +++ge +g +k+L +   ++ +++   W+mhey+l
  XP_027099163.1  98 WEGQAKAQDIPNSRGEIIGSRKMLNYVL-NSGSPQGGGWIMHEYSL 142
                     **************************94.45555789*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MDRDCPIGFH FRPTEEEIIT LLWLKDTNQQ KHITDVVPEK ILYDADASPC KLFGDEDVRW  60
ELCDDSGKKR TKRMAYVFTK LSKMSANRIA RTAGCETWEG QAKAQDIPNS RGEIIGSRKM  120
LNYVLNSGSP QGGGWIMHEY SLAGSLLDRI GSTDYVVCRI TIDNEKYTEV KKVAEAKQGV  180
NQSGSMRCTK NPKVLGKRSE PSFVQQRSNP SKMPRSGVVE EETLGNAAAN LAIGASTDGA  240
METPNSLNNH EGFVINPQAI MSHKLFGMDG QTSDRDASLE GTQSVNLMGG IGDGSGLDDD  300
MVKFTALLDG ILEEDDGSIR PEVALQYACT TNFSDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.16e-13NAC family protein