PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027098807.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 317aa    MW: 36009.3 Da    PI: 8.6478
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027098807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-123578148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd  l ++vk +G + W+    +m  gRt+kqc++rw+++l
   XP_027098807.1 35 KGLWTEEEDNTLRRLVKHFGVKKWAE---KMV-GRTGKQCRERWHNHL 78
                     678*********************99...777.8************97 PP
2Myb_DNA-binding50.54.9e-1684128147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ W++eE+ llv+ + q G++ W+ Ia++++ gR  +++k++w++ 
   XP_027098807.1  84 KDTWSPEEERLLVETHMQVGNR-WAEIAKRIP-GRAVNSIKNHWNTT 128
                      679*******************.*********.************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MNLKGGFGEE ENVASRIPRG TGRREKGGFS VALIKGLWTE EEDNTLRRLV KHFGVKKWAE  60
KMVGRTGKQC RERWHNHLRP NIKKDTWSPE EERLLVETHM QVGNRWAEIA KRIPGRAVNS  120
IKNHWNTTKR RQNSRGKVKK PERVQNERNQ STILQEYIKS TYPNNNSLTT ISVDLSSTIV  180
IPTNSATTCP TFPNSIISED PSSTHFNLLY PELSQSTTDD SLFYLTQHSY DDEINFMQNL  240
LGNNNLNAFL VGENDKGKAL LDIGIDPKGD QENNQSAHIM DEGNALTAPP EIYPSNMNMK  300
TITMDQTSPS SRKEVDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-54MYB family protein