PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027098578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | CO-like | ||||||||
Protein Properties | Length: 446aa MW: 49478.2 Da PI: 5.1445 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 30.8 | 6e-10 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC++C + H+ H++v XP_027098578.1 16 ARACDNCIKKRARWYCAADDAFLCQNCDASVHSAnplarrHERV 59 578*****************************657888888876 PP | |||||||
2 | CCT | 67.7 | 3.1e-23 | 389 | 432 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_027098578.1 389 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 432 9*****************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence |
MVSDRKLANA MGGKTARACD NCIKKRARWY CAADDAFLCQ NCDASVHSAN PLARRHERVR 60 LKTSSLKPSK ELSLEISVPS WHHGFTKKAR TPRSGKHAKS KSDQEPARNP LHLVPEICSD 120 EIETSHEENE EQLLYRVPIF DPFVAELRTS ENSNEAATNM GNDGEAADAV GVDESKGTVY 180 DCGNDINQFH GPLPSEMELA EFAADVESLL GKGLDDESFA IEGLGLSDCK EADLVDNSSL 240 GSGRVKVEDE GEAEVAMGNN QIDGEIDMSR GDHEPFELSF DYDSPMTCEE EDNKAGVERA 300 IALKDHLKSE DCKVEDAGIN TNKKILLSLD YEGVISAWAD QRSPWTTGER PELDSNDCWP 360 DCLGTCGTIH NLYGEVGMFG HPAMMDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK 420 RPRMKGRFVK RATFSAAAAA FPLHTK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 400 | 416 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-102 | CO-like family protein |