PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027098394.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 386aa    MW: 41593.8 Da    PI: 6.1288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027098394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-194898155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  XP_027098394.1 48 SRFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 98
                    6788******.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MDMSSSRGSK SNDEVVLSGN SAASPNSKSR RKNQQQQQQD QSSGGGSSRF LGVRRRPWGR  60
YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGSR ARTNFVYSDM PPGSSVTSIV  120
SPDESDSLMH HAHDHDLSSA GLVLFSNSPQ QQQHQHHQQQ FLFFGGHHET SNNHFTPAGD  180
GRGHYWNKWN HHATCGGVAA AAAGTGNSTN VIINSLFQQE EDQNTNSAAA PGDSYDNMMS  240
SFLLYGNNSD DRSSSSSGAG AELPPLPPDI TSSYFGSPTS EPPLLLSDMG RGILNDMSFL  300
ELSERPSRPS FSSTQGIMEY HDLVNSGTTG TATAAAAASA GSCDFVHPSS SDSFGADHAN  360
ILDDHHHHLS CSSTNNSINF SSFGWF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-28ERF family protein