PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098350.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 580aa MW: 63065.2 Da PI: 8.7373

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027098350.1 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	15.4	5.4e-05	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_027098350.1 159 WKCDKCSKKYAVQSDWKAHQKTC 181 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MSNLSGDEGS FSSGEEHQAD KQPQQLQSQS HGSNFAATNT NGSSSQQQQQ PGAKKKRNLP 60 GTPDPTAEVV ALSPTTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTTTEVR 120 KRVYICPEPT CVHHNPARAL GDLTGIKKHY SRKHGEKKWK CDKCSKKYAV QSDWKAHQKT 180 CGTREYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKVNQG LMNSMGPNMQ GQMPDFMSSM 240 PMNPNANTSM GLSEFNNFDP KNPLKSLPQD LVPMPFKPTN MVGGMFSSSS GTLFGSPKGI 300 SSSCSGLQLS SNTPSSFNYL QEGKNGSQLS GSPHMSATAL LQKAAQMGAT ASNTINSPMM 360 QKSFVSSMAG PDQIAGPKSS AYSSMQQHNI NNSNNASYEN FTNHQPDQSG LAGLHNAGGF 420 NPHLLHKGPS QETNHHHHQL FDHSGDAAAA GTSAMNDLGM YSGILLGSDQ NLGFIKGMDR 480 RGGGDDSDSP AGLMQSRGSM SRSPAAGPTR MRGGNGNDVT TVDFLGIGVS RPPNVHEQQQ 540 RLDQLEAMSQ HRMQVMDPFH QQLSHGHGEP AHVEKPLWDV

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MSNLSGDEGS FSSGEEHQAD KQPQQLQSQS HGSNFAATNT NGSSSQQQQQ PGAKKKRNLP  60
GTPDPTAEVV ALSPTTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTTTEVR  120
KRVYICPEPT CVHHNPARAL GDLTGIKKHY SRKHGEKKWK CDKCSKKYAV QSDWKAHQKT  180
CGTREYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKVNQG LMNSMGPNMQ GQMPDFMSSM  240
PMNPNANTSM GLSEFNNFDP KNPLKSLPQD LVPMPFKPTN MVGGMFSSSS GTLFGSPKGI  300
SSSCSGLQLS SNTPSSFNYL QEGKNGSQLS GSPHMSATAL LQKAAQMGAT ASNTINSPMM  360
QKSFVSSMAG PDQIAGPKSS AYSSMQQHNI NNSNNASYEN FTNHQPDQSG LAGLHNAGGF  420
NPHLLHKGPS QETNHHHHQL FDHSGDAAAA GTSAMNDLGM YSGILLGSDQ NLGFIKGMDR  480
RGGGDDSDSP AGLMQSRGSM SRSPAAGPTR MRGGNGNDVT TVDFLGIGVS RPPNVHEQQQ  540
RLDQLEAMSQ HRMQVMDPFH QQLSHGHGEP AHVEKPLWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-101	C2H2 family protein