PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027097979.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 332aa    MW: 36866.7 Da    PI: 6.1151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027097979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.9e-164493255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L +++eY+++Lq
  XP_027097979.1 44 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLLEVIEYVQYLQ 93
                    889*************************9....8*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MKSGKGHQEE EEEEEEDFGA KKDSTPSQNN PKDGKSSDKA NAMRSKHSVT EQRRRSKINE  60
RFQILRELIP HSDQKRDTAS FLLEVIEYVQ YLQEKVQKCE GSYQAWNSEP TKLMPWRNSH  120
WRTQSFVSHP QTMKNGSGSG PLYPGRLEDN NITVSSTVQP SQQNPIESDL GREVTSKTMD  180
QQTELTNQAM PMPMPLQAAM PVPIQNDGAF SHSQPRPAPD AQSSDCPITD DMLNHPEGLT  240
IEGGTISISS IYSQGLLNTL TQALQTAGVD LSQATVSVQI NLGKQANRGL ASGISVTKDH  300
ERRSPSGDQL AGQYRDTSNG EDFSQAQKRL KR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-81bHLH family protein