PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027097519.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 295aa    MW: 31323.8 Da    PI: 7.7802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027097519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-101153444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+ e d+ + +a + ++ +   +W++Ia+ ++ g++l+++k+++
   XP_027097519.1 11 WSREQDKAFENALATYPEDsadRWEKIAADVP-GKSLEEIKHHY 53
                     ********************************.**********9 PP
2Myb_DNA-binding43.85.8e-14121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_027097519.1 121 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MTADESTSAV WSREQDKAFE NALATYPEDS ADRWEKIAAD VPGKSLEEIK HHYEILVDDV  60
NRIESGCVPL PSYSSCLDGS TSQAGDEGTG KKSGNLGHFS SESNHGGKAS RSDQERRKGI  120
AWTEDEHRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVNTG DVSVPQGPIT GQTNGPAASG SSAKSNKPPS QAPTAAPGVG MYGTTTIGQP  240
VGGPLVSAVG TPVNLPPAAH MAYGVRAPVP GTMVPGAPVA MGPVTYPMSH TSAHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-129MYB family protein