PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097264.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 323aa MW: 35857.7 Da PI: 7.9885

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.4	5.4e-40	25	101	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hska++v++ g+e rfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+qa XP_027097264.1 25 CLVDGCNADLSQCRDYHRRHKVCEHHSKASKVTIGGRELRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQA 101 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MESSSLTGSS KRAKAPGNVT QMAHCLVDGC NADLSQCRDY HRRHKVCEHH SKASKVTIGG 60 RELRFCQQCS RFHSLGEFDE GKRSCRKRLD GHNRRRRKPQ AELSRNSGML FPSQQGSSRL 120 LSFGTPQIFP SAVVSSSWSG VVKPENDVVL YCQSNTNYID RQNAFPESVH DYKGVNQFQF 180 IQSTPRTLPE TSICQPLLDP DSASGHNNSS QKIFSDGLNQ VINSDRALSL LSSAPAVTRE 240 IGFSHMVQPD SISQAQSLVH NLQYGSPGQF PYAQEIENKP VISESDSRVS NNATLHFQEM 300 FQNGPEESST SGGSQQTLTF LWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	99	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-43	SBP family protein