PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097064.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

RAV

Protein Properties

Length: 378aa MW: 41657.1 Da PI: 9.662

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.5	8.2e-14	71	119	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g XP_027097064.1 71 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDIAAQRFRG 119 689*9788.8*****3.....5***********************98 PP
2	B3	103.3	1.3e-32	202	304	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ +++ XP_027097064.1 202 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGNTSKGVLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGADKQ 296 89**************************88999**************************************************88668888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l++ + r+ XP_027097064.1 297 LYIDWKRR 304 89988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MDNSSIDEST TSDNSFASSA APASLSNMSL PVNIKSSPEQ QSLCRVGSGA SSMIIDAEVG 60 VEAESRKLPS SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAARAY DIAAQRFRGR 120 DAVTNFKPLN EAEEDDVEAA FLSCHSKAEI VDMLRKHTYN DELEQSKRNY GLDGNGKKGC 180 KGIAGLHSFG YQKTTKAREQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSGNTSKGVL 240 LNFEDMGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFQRS TGADKQLYID 300 WKRRNGAAEA APPVAAGISI PIQPVQMVRL FGVNIFKVPL PVNGVVMDSN SSCSGKRVRG 360 MELLGLECSK KPRAIGAL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MDNSSIDEST TSDNSFASSA APASLSNMSL PVNIKSSPEQ QSLCRVGSGA SSMIIDAEVG  60
VEAESRKLPS SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAARAY DIAAQRFRGR  120
DAVTNFKPLN EAEEDDVEAA FLSCHSKAEI VDMLRKHTYN DELEQSKRNY GLDGNGKKGC  180
KGIAGLHSFG YQKTTKAREQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSGNTSKGVL  240
LNFEDMGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFQRS TGADKQLYID  300
WKRRNGAAEA APPVAAGISI PIQPVQMVRL FGVNIFKVPL PVNGVVMDSN SSCSGKRVRG  360
MELLGLECSK KPRAIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-145	RAV family protein