PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096890.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 338aa    MW: 36574.1 Da    PI: 9.5904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-13101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   XP_027096890.1 101 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 145
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MASSCSLQCG NDGQNCCQTC PEVSGAGPAA AAAADGCNKG FMLFGVRVME GSFRKSASMN  60
NLAQFEQPQD SMNNNDVNAG YASDDVVHPS ARNRERKRGV PWTEDEHRLF LLGLQKVGKG  120
DWRGISRNFV KTRTPTQVAS HAQKYFLRRN NHSRRRRRSS LFDITTDTVL GSAMEDRAQE  180
ESVPQPAMQQ QKNLINNLEK FPMSTYPTNI APVMLPVNPV KGVSSLESLT LGPANNQLLL  240
NRTNNTSSPT PKLIRPIPLA PIPPSSKMAD LNLNKTTIPD PLPLSLKLST PSSSAASQPS  300
SEQHSPSSSS PPARHTSPFQ AMPSSFDNSS GDSIISVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.22e-65MYB_related family protein