PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096336.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 400aa MW: 44827.3 Da PI: 8.0952

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.9e-14	14	62	1	48
TSSS-HHHHHHHHHHHHH.TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ +++q +G +W++ +++ g+ R++k+c++rw +yl XP_027096336.1 14 KGTWTPEEDQKLLSYIEQqHGHSSWRALPAKAGLERCGKSCRLRWTNYL 62 799***********8527777**********************97 PP
2	Myb_DNA-binding	54.4	3e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_027096336.1 68 RGKFSSQEDQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MGRSPCCEKL GLRKGTWTPE EDQKLLSYIE QQHGHSSWRA LPAKAGLERC GKSCRLRWTN 60 YLRPDIKRGK FSSQEDQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLTKM 120 GIDPSTHRPK TNALGSAHQK DTANLSHMAQ WESARLEAES RLVRESKLLS LSTAFNHSHL 180 SPPASAQLPL AKALASPLVT PLEPMVQKHY FHCLDILKAW QRTWTTTKNA NGFFSTAIGS 240 LQSPTSTLHF SDNTFAMSSA ARLTGENLPF NSTINCEARD MKATGTSTWQ YLDTPKNNDP 300 LAVTGEKMES TTGNMMQLNH DVNVQCDFDP VGGAYTMEFS LRSPGFMEGF ADADIDDSNN 360 NPTGSYQSLG YRWGGDLEDN QKYWNNIVNE EISALGSPFF

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MGRSPCCEKL GLRKGTWTPE EDQKLLSYIE QQHGHSSWRA LPAKAGLERC GKSCRLRWTN  60
YLRPDIKRGK FSSQEDQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLTKM  120
GIDPSTHRPK TNALGSAHQK DTANLSHMAQ WESARLEAES RLVRESKLLS LSTAFNHSHL  180
SPPASAQLPL AKALASPLVT PLEPMVQKHY FHCLDILKAW QRTWTTTKNA NGFFSTAIGS  240
LQSPTSTLHF SDNTFAMSSA ARLTGENLPF NSTINCEARD MKATGTSTWQ YLDTPKNNDP  300
LAVTGEKMES TTGNMMQLNH DVNVQCDFDP VGGAYTMEFS LRSPGFMEGF ADADIDDSNN  360
NPTGSYQSLG YRWGGDLEDN QKYWNNIVNE EISALGSPFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	2e-98	MYB family protein