PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027096315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 154aa MW: 17104.3 Da PI: 7.4681 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.4e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dC+++pyfp ++p++f vh+++Gasnv k+l+++p ++r +a++s+ yeA++r++dPvyG++g+i+ l+qq++ ++ ela XP_027096315.1 5 RCAACKYLRRRCSPDCIFSPYFPPNNPQRFLEVHRIYGASNVAKMLEKAPVNQRAEAANSIHYEAHCRIKDPVYGCAGIITLLNQQINDAQCELA 99 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027096315.1 100 KIQAE 104 99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence |
MNSTRCAACK YLRRRCSPDC IFSPYFPPNN PQRFLEVHRI YGASNVAKML EKAPVNQRAE 60 AANSIHYEAH CRIKDPVYGC AGIITLLNQQ INDAQCELAK IQAEIAAHNG HHAGILPPYQ 120 QIADASSFPN YPVEGDGAFP ATHDPSFPQF YLNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-50 | LBD family protein |