PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027095120.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 277aa MW: 31233.7 Da PI: 7.0404

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027095120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++ G g+W++ +++ g+ R++k+c++rw +yl XP_027095120.1 14 KGPWTKEEDQILISYINENGRGNWRALPKKAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.2	7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia+t++ gRt++++k+ w+++l XP_027095120.1 67 RGNFTQEEEDTIIKLHQALGNR-WSAIAATLP-GRTDNEIKNVWHSHL 112 89******************.*****.*********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MGRAPCCEKM GLNKGPWTKE EDQILISYIN ENGRGNWRAL PKKAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TQEEEDTIIK LHQALGNRWS AIAATLPGRT DNEIKNVWHS HLKKRLIPQQ 120 DHQGQAVRKT KPEQGTNKAL SVEKPKFHCQ DSNSSPVKII VSKQEPGTNN QSSSLQYSSS 180 DDISSSLSFT DATTTTTIPD NPTEIYLTNS GDGDSVSNKH QELDQDIWHD VVSSQDHSLS 240 PVLHRGGCGF NPFTNDDINF WCDLFTRTED ISHLLEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-72	MYB family protein