PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093953.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 344aa MW: 39339.9 Da PI: 9.7103

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.2	3e-18	25	112	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ff++l s + +++l +p kfa++ ++k ++l+ +sg +W+ l + +++ +l++GWk+Fv ++ Lke+D+++Fk++g s+f v XP_027093953.1 25 FFQTL--SGRNYRNQLAIPQKFANNLKEK--LVGAVSLKGPSGLEWKAGL--TMIDDTLYLKEGWKKFVVDHSLKENDVLIFKYVGASRF--DVL 111 67777..78888999******555444..5558***********..99999**************************99888..555 PP E CS B3 96 v 96 + XP_027093953.1 112 M 112 5 PP
2	B3	45.3	1.6e-14	225	310	1	88
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 f+ v+ p +v + l +p + a++++ + +s++ltl+ + ++W+v++ y++ ++ l++GWk+Fv++n L+e D+++F l+ g + XP_027093953.1 225 FIVVMRPTHVYRGFYLQIPSEWATKYMPN--RSQDLTLQV-KDKTWKVRF-YKRDYRTGGLAGGWKRFVHENFLEEFDVCLFNLVtGAtD 310 788999******************866..566677555.66***.7666666789********************8744434 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGDDGRACRK WEEEIYWSHF QSAQFFQTLS GRNYRNQLAI PQKFANNLKE KLVGAVSLKG 60 PSGLEWKAGL TMIDDTLYLK EGWKKFVVDH SLKENDVLIF KYVGASRFDV LMFDYQSLCE 120 KESSYFIKRC ENGGTDGGCK RKDNSTETIE VTNEASHDVS ESTPSKRPRK HGALPPRSRG 180 RQRGTCSSIN RSVFSGPASH RRQVTEEDKD KALKMACASA SENSFIVVMR PTHVYRGFYL 240 QIPSEWATKY MPNRSQDLTL QVKDKTWKVR FYKRDYRTGG LAGGWKRFVH ENFLEEFDVC 300 LFNLVTGATD DIVMDVSIFK VVEGVIPVTR LPPINLKGRK PMKI

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGDDGRACRK WEEEIYWSHF QSAQFFQTLS GRNYRNQLAI PQKFANNLKE KLVGAVSLKG  60
PSGLEWKAGL TMIDDTLYLK EGWKKFVVDH SLKENDVLIF KYVGASRFDV LMFDYQSLCE  120
KESSYFIKRC ENGGTDGGCK RKDNSTETIE VTNEASHDVS ESTPSKRPRK HGALPPRSRG  180
RQRGTCSSIN RSVFSGPASH RRQVTEEDKD KALKMACASA SENSFIVVMR PTHVYRGFYL  240
QIPSEWATKY MPNRSQDLTL QVKDKTWKVR FYKRDYRTGG LAGGWKRFVH ENFLEEFDVC  300
LFNLVTGATD DIVMDVSIFK VVEGVIPVTR LPPINLKGRK PMKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	4e-63	B3 family protein