PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093952.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 363aa MW: 41525.6 Da PI: 9.9966

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.3e-18	44	131	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ff++l s + +++l +p kfa++ ++k ++l+ +sg +W+ l + +++ +l++GWk+Fv ++ Lke+D+++Fk++g s+f v XP_027093952.1 44 FFQTL--SGRNYRNQLAIPQKFANNLKEK--LVGAVSLKGPSGLEWKAGL--TMIDDTLYLKEGWKKFVVDHSLKENDVLIFKYVGASRF--DVL 130 67777..78888999******555444..5558***********..99999**************************99888..555 PP E CS B3 96 v 96 + XP_027093952.1 131 M 131 5 PP
2	B3	45.1	1.8e-14	244	329	1	88
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 f+ v+ p +v + l +p + a++++ + +s++ltl+ + ++W+v++ y++ ++ l++GWk+Fv++n L+e D+++F l+ g + XP_027093952.1 244 FIVVMRPTHVYRGFYLQIPSEWATKYMPN--RSQDLTLQV-KDKTWKVRF-YKRDYRTGGLAGGWKRFVHENFLEEFDVCLFNLVtGAtD 329 788999******************866..566677555.66***.7666666789********************8744434 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MVCDRTLTRG RIKLISGRKM GDDGRACRKW EEEIYWSHFQ SAQFFQTLSG RNYRNQLAIP 60 QKFANNLKEK LVGAVSLKGP SGLEWKAGLT MIDDTLYLKE GWKKFVVDHS LKENDVLIFK 120 YVGASRFDVL MFDYQSLCEK ESSYFIKRCE NGGTDGGCKR KDNSTETIEV TNEASHDVSE 180 STPSKRPRKH GALPPRSRGR QRGTCSSINR SVFSGPASHR RQVTEEDKDK ALKMACASAS 240 ENSFIVVMRP THVYRGFYLQ IPSEWATKYM PNRSQDLTLQ VKDKTWKVRF YKRDYRTGGL 300 AGGWKRFVHE NFLEEFDVCL FNLVTGATDD IVMDVSIFKV VEGVIPVTRL PPINLKGRKP 360 MKI

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MVCDRTLTRG RIKLISGRKM GDDGRACRKW EEEIYWSHFQ SAQFFQTLSG RNYRNQLAIP  60
QKFANNLKEK LVGAVSLKGP SGLEWKAGLT MIDDTLYLKE GWKKFVVDHS LKENDVLIFK  120
YVGASRFDVL MFDYQSLCEK ESSYFIKRCE NGGTDGGCKR KDNSTETIEV TNEASHDVSE  180
STPSKRPRKH GALPPRSRGR QRGTCSSINR SVFSGPASHR RQVTEEDKDK ALKMACASAS  240
ENSFIVVMRP THVYRGFYLQ IPSEWATKYM PNRSQDLTLQ VKDKTWKVRF YKRDYRTGGL  300
AGGWKRFVHE NFLEEFDVCL FNLVTGATDD IVMDVSIFKV VEGVIPVTRL PPINLKGRKP  360
MKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	5e-63	B3 family protein