PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093719.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 268aa MW: 29676.9 Da PI: 6.9662

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	131.5	2.8e-41	59	153	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 r+ ++++Pi+n+ rim++ lP na++s++ak t+qecvs++i f+t+ea+++c+re+rkti+++dll+a a+lGf++y+ p+++yl++yr+ e++ XP_027093719.1 59 RDPEHLFPITNIFRIMRRNLPPNARVSEEAKSTIQECVSDYINFITAEANERCHREHRKTITAEDLLYAHANLGFDNYIGPITLYLERYRQNEAA 153 5668899***********************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MDNSENSSQG HKSRGNRGSN LALVIRELGD TANNVARNPS SPNVSINNNA RMPMPYLRRD 60 PEHLFPITNI FRIMRRNLPP NARVSEEAKS TIQECVSDYI NFITAEANER CHREHRKTIT 120 AEDLLYAHAN LGFDNYIGPI TLYLERYRQN EAAQNTVHGD PSVKRTTIFS NVHTQGHPSM 180 LAPAPSPLPP INSVFPVGAD EQTFFNPTPM SNKFYFQNAS GASHGDGFDV VGPSSNAEFP 240 RAFFPHNFHP GPTLPYGSDP HGLGPDGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	3e-41	NF-YB family protein