PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027093320.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 678aa MW: 74691.2 Da PI: 6.8706

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027093320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.2	2.9e-30	79	163	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++ + +t+++fdqlea XP_027093320.1 79 RWPRQETLALLKIRSEMDVAFRDSSLKGPLWEEVSRKMAELGYQRSSKKCKEKFENVFKYHKRTKEGRASK--ADGKTYRFFDQLEA 163 8******************************************************************96..66678*****85 PP
2	trihelix	105.7	3.3e-33	488	573	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_027093320.1 488 RWPKAEVQALIRMRTNLDVKYQENGPKGPLWEEISSGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 573 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MMLGTSSSSA GGLIGGNSAE AGAAGTTGAA AAIEAGAAPH DSGGSGEVGG GTGGAIPSGF 60 SEDEKARIEE GERAAGGNRW PRQETLALLK IRSEMDVAFR DSSLKGPLWE EVSRKMAELG 120 YQRSSKKCKE KFENVFKYHK RTKEGRASKA DGKTYRFFDQ LEALETNPSM QLPQPPTRPQ 180 PPTPAAAAMA VPMHAASNPP ISSHGTVSSA PLSPNPVSFA QNFLPQNVTS NAIPTIPSLP 240 PSQSQHLHPP PPTTNAANHP PPPPHHHHHH PSNTTFPHHP SLSTSMLSNS SSSSTSSDED 300 IGRRHLRKRK WKDFFERLMK NVIDKQEELQ KKFLDTLEKR ERDRMIREEA WRVQEMARIN 360 REHDLLVQER SMAAAKDAAV IAFLQKITEQ QNPNNPNSTP IQLPAQLQLP ETTRIPPAPP 420 PTVPPSMSVS VPQATPVTPI PPPAATAAVA PQPPIQATMG AAPTRNLESS PNKTDNGIQN 480 FMQPSSSRWP KAEVQALIRM RTNLDVKYQE NGPKGPLWEE ISSGMRKLGY NRNAKRCKEK 540 WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYREKAK GETTSFASGY QNVKPENPMV 600 PIMARPEQQW PLQQDQQQQQ QQQQQQQQDS AMEDHGSDNM DENDHDEDDG DEDEDEDEGA 660 GYEIVTNKQA SSVATTVE

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MMLGTSSSSA GGLIGGNSAE AGAAGTTGAA AAIEAGAAPH DSGGSGEVGG GTGGAIPSGF  60
SEDEKARIEE GERAAGGNRW PRQETLALLK IRSEMDVAFR DSSLKGPLWE EVSRKMAELG  120
YQRSSKKCKE KFENVFKYHK RTKEGRASKA DGKTYRFFDQ LEALETNPSM QLPQPPTRPQ  180
PPTPAAAAMA VPMHAASNPP ISSHGTVSSA PLSPNPVSFA QNFLPQNVTS NAIPTIPSLP  240
PSQSQHLHPP PPTTNAANHP PPPPHHHHHH PSNTTFPHHP SLSTSMLSNS SSSSTSSDED  300
IGRRHLRKRK WKDFFERLMK NVIDKQEELQ KKFLDTLEKR ERDRMIREEA WRVQEMARIN  360
REHDLLVQER SMAAAKDAAV IAFLQKITEQ QNPNNPNSTP IQLPAQLQLP ETTRIPPAPP  420
PTVPPSMSVS VPQATPVTPI PPPAATAAVA PQPPIQATMG AAPTRNLESS PNKTDNGIQN  480
FMQPSSSRWP KAEVQALIRM RTNLDVKYQE NGPKGPLWEE ISSGMRKLGY NRNAKRCKEK  540
WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYREKAK GETTSFASGY QNVKPENPMV  600
PIMARPEQQW PLQQDQQQQQ QQQQQQQQDS AMEDHGSDNM DENDHDEDDG DEDEDEDEGA  660
GYEIVTNKQA SSVATTVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-61	Trihelix family protein